You download the original first release msi, then create a new folder and apply the patch to the msi, then create a transform file for the customized settings. Then push the new patched msi with the transform file using pdq inventory.
You download the original first release msi, then create a new folder and apply the patch to the msi, then create a transform file for the customized settings. Then push the new patched msi with the transform file using pdq inventory.